PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000276-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 256aa    MW: 28488.9 Da    PI: 8.0223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000276-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034106128123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_000276-RA 106 FSCNYCQRKFFSSKALGGHQNAH 128
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.3E-4104134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-6104135No hitNo description
PROSITE profilePS5015711.24106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKASSSELEA ETLSADESDT NSQVGSNMSV HRTSPDPFKE STASSCLTDT IKLQHDPRPV  60
SLDLSLGLKT HADGRKESVE RSHYRTPVRV AAAEMQQQRT SVPRVFSCNY CQRKFFSSKA  120
LGGHQNAHKR ERTFANRAMR MEMFFQRYPS NPAASLPLHG SACRFLGIKP RFPVRYGAAL  180
PERTGARFEH DYLGPPVVVE DDEAELFWPR SFRQVPEGVT GHPGLFEWSG SSSFNFVTVA  240
SVAEADSPPP DLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240865.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392637e-35ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A061EDS86e-74A0A061EDS8_THECC; Zinc finger protein 4
STRINGPOPTR_0010s11330.18e-65(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-36zinc finger protein 4